{"id":1604,"date":"2024-05-30T17:06:10","date_gmt":"2024-05-30T15:06:10","guid":{"rendered":"https:\/\/easybi.lu\/?p=1604"},"modified":"2025-01-10T08:33:33","modified_gmt":"2025-01-10T07:33:33","slug":"dataframes-with-pandas-on-jupyterlab","status":"publish","type":"post","link":"https:\/\/easybi.lu\/index.php\/2024\/05\/30\/dataframes-with-pandas-on-jupyterlab\/","title":{"rendered":"Dataframes with Pandas on JupyterLab"},"content":{"rendered":"\n<h2 class=\"wp-block-heading\">Introduction<\/h2>\n\n\n\n<p>Pandas standing for <a href=\"https:\/\/en.wikipedia.org\/wiki\/Panel_data\" data-type=\"link\" data-id=\"https:\/\/en.wikipedia.org\/wiki\/Panel_data\">panel data<\/a> is managing an outstanding object called <strong>DataFrame <\/strong>and the first time I encountered the famous \u00ab\u00a0<a href=\"https:\/\/pandas.pydata.org\/docs\/reference\/api\/pandas.DataFrame.html\" data-type=\"link\" data-id=\"https:\/\/pandas.pydata.org\/docs\/reference\/api\/pandas.DataFrame.html\">dataframe object<\/a>\u00a0\u00bb concept was when I was asked to put in place an Apache Spark SQL environment in my current customer&rsquo;s day.<\/p>\n\n\n\n<p>As a SQL and java developper, I didn&rsquo;t immediatly realize that I ran into one of the most powerful API to manage data, a mix between SQL and functional programming using lambda functions.<\/p>\n\n\n\n<p>The dataframe (or dataset of rows, thanks to java \ud83d\ude00 ) is technicaly speaking a simple table and can be manipulated in ease with functions inspired from SQL keywords, this brillant idea leads to the consecration of Apache Spark version 2 with its <a href=\"https:\/\/spark.apache.org\/docs\/latest\/sql-programming-guide.html\">Spark SQL module<\/a>, but that not the subject of this blog post \ud83d\ude09<\/p>\n\n\n\n<figure class=\"wp-block-image size-full is-resized\"><img loading=\"lazy\" decoding=\"async\" width=\"621\" height=\"470\" src=\"https:\/\/easybi.lu\/wp-content\/uploads\/2024\/05\/pandas-dataframe.png\" alt=\"\" class=\"wp-image-1620\" style=\"width:287px;height:auto\" srcset=\"https:\/\/easybi.lu\/wp-content\/uploads\/2024\/05\/pandas-dataframe.png 621w, https:\/\/easybi.lu\/wp-content\/uploads\/2024\/05\/pandas-dataframe-300x227.png 300w\" sizes=\"auto, (max-width: 621px) 100vw, 621px\" \/><\/figure>\n\n\n\n<p><\/p>\n\n\n\n<h2 class=\"wp-block-heading\">Pandas VS Pandas on Apache Spark<\/h2>\n\n\n\n<p>As a new python developper I recently discover Pandas and this is a really better starting point to learn the concept than installing a complete Apache Spark instance, you don&rsquo;t need to know about technical background concept like <a href=\"https:\/\/spark.apache.org\/pandas-on-spark\/\" data-type=\"link\" data-id=\"https:\/\/spark.apache.org\/pandas-on-spark\/\">ressource management<\/a>, <a href=\"https:\/\/spark.apache.org\/docs\/latest\/cluster-overview.html\" data-type=\"link\" data-id=\"https:\/\/spark.apache.org\/docs\/latest\/cluster-overview.html\">DAG<\/a>, Catalyst engine optimizer, <a href=\"https:\/\/spark.apache.org\/docs\/latest\/cluster-overview.html\" data-type=\"link\" data-id=\"https:\/\/spark.apache.org\/docs\/latest\/cluster-overview.html\">clustered machine<\/a> principle, etc&#8230; just install the python libraries and we are good to go and even better, we can use a notebook editor like <a href=\"https:\/\/jupyterlab.readthedocs.io\/en\/latest\/\" data-type=\"link\" data-id=\"https:\/\/jupyter.org\/\">JupyterLab<\/a> using another simple pip install command.<\/p>\n\n\n\n<p>As you can see the <a href=\"https:\/\/spark.apache.org\/pandas-on-spark\/\" data-type=\"link\" data-id=\"https:\/\/spark.apache.org\/pandas-on-spark\/\">complete difference here<\/a> between classic Pandas intallation and Pandas on Spark, Pandas is easy to familiarize yourself with, as its single-threaded and just simply put the data in memory, very convenient to quickly manage a csv or excel dataset.<\/p>\n\n\n\n<p>To go further, check also the full <a href=\"https:\/\/spark.apache.org\/docs\/3.5.1\/api\/python\/getting_started\/install.html\" data-type=\"link\" data-id=\"https:\/\/spark.apache.org\/docs\/3.5.1\/api\/python\/getting_started\/install.html\">pyspark getting started<\/a>, pay attention that there are some limitations due to distributed and parallel execution model, I would suggest to use <a href=\"https:\/\/spark.apache.org\/docs\/latest\/api\/python\/reference\/index.html\" data-type=\"link\" data-id=\"https:\/\/spark.apache.org\/docs\/latest\/api\/python\/reference\/index.html\">the pure Spark API<\/a>.<\/p>\n\n\n\n<h2 class=\"wp-block-heading\">Demo<\/h2>\n\n\n\n<p>Ok, talking is cheap let&rsquo;s see how it works, I just introduce two simple ways to open a notebook and launch a code sample<\/p>\n\n\n\n<ul class=\"wp-block-list\">\n<li>Using an online <a href=\"https:\/\/mybinder.org\/\" data-type=\"link\" data-id=\"https:\/\/mybinder.org\/\">MyBinder<\/a> notebook but as I didn&rsquo;t success (let me know from your side in comment) I recommand the second one \ud83d\ude09<\/li>\n\n\n\n<li>Like usual, using docker compose&#8230; locally<\/li>\n<\/ul>\n\n\n\n<pre class=\"wp-block-code\"><code class=\"\">$ git clone https:\/\/github.com\/jsminet\/pandas-getting-started.git\n$ docker compose up -d<\/code><\/pre>\n\n\n\n<p>Once both containers are up and running just open your favorite browser and go to <a href=\"http:\/\/jupyter.localtest.me\" data-type=\"link\" data-id=\"jupyter.localtest.me\">jupyter.localtest.me<\/a>, then type <strong>secret <\/strong>as the password, the password came from a crypted file I generated into a specific folder.<\/p>\n\n\n\n<figure class=\"wp-block-image size-full is-resized\"><img loading=\"lazy\" decoding=\"async\" width=\"883\" height=\"293\" src=\"https:\/\/easybi.lu\/wp-content\/uploads\/2024\/05\/jupyterlab-connection-screen.png\" alt=\"\" class=\"wp-image-1622\" style=\"width:840px;height:auto\" srcset=\"https:\/\/easybi.lu\/wp-content\/uploads\/2024\/05\/jupyterlab-connection-screen.png 883w, https:\/\/easybi.lu\/wp-content\/uploads\/2024\/05\/jupyterlab-connection-screen-300x100.png 300w, https:\/\/easybi.lu\/wp-content\/uploads\/2024\/05\/jupyterlab-connection-screen-768x255.png 768w\" sizes=\"auto, (max-width: 883px) 100vw, 883px\" \/><\/figure>\n\n\n\n<p>Click on <strong>work <\/strong>directory and double click on <strong>sql-comparison.ipynb<\/strong>, this notebook loads two minimal csv files into memory.<\/p>\n\n\n\n<figure class=\"wp-block-gallery has-nested-images columns-default wp-block-gallery-1 is-layout-flex wp-block-gallery-is-layout-flex\">\n<figure class=\"wp-block-image size-full is-style-default\"><a href=\"https:\/\/easybi.lu\/wp-content\/uploads\/2024\/05\/jupyterlab-open-notebook-1.png\"><img loading=\"lazy\" decoding=\"async\" width=\"352\" height=\"182\" data-id=\"1625\" src=\"https:\/\/easybi.lu\/wp-content\/uploads\/2024\/05\/jupyterlab-open-notebook-1.png\" alt=\"\" class=\"wp-image-1625\" srcset=\"https:\/\/easybi.lu\/wp-content\/uploads\/2024\/05\/jupyterlab-open-notebook-1.png 352w, https:\/\/easybi.lu\/wp-content\/uploads\/2024\/05\/jupyterlab-open-notebook-1-300x155.png 300w, https:\/\/easybi.lu\/wp-content\/uploads\/2024\/05\/jupyterlab-open-notebook-1-350x182.png 350w\" sizes=\"auto, (max-width: 352px) 100vw, 352px\" \/><\/a><\/figure>\n\n\n\n<figure class=\"wp-block-image size-full\"><a href=\"https:\/\/easybi.lu\/wp-content\/uploads\/2024\/05\/jupyterlab-open-notebook2-1.png\"><img loading=\"lazy\" decoding=\"async\" width=\"339\" height=\"222\" data-id=\"1626\" src=\"https:\/\/easybi.lu\/wp-content\/uploads\/2024\/05\/jupyterlab-open-notebook2-1.png\" alt=\"\" class=\"wp-image-1626\" srcset=\"https:\/\/easybi.lu\/wp-content\/uploads\/2024\/05\/jupyterlab-open-notebook2-1.png 339w, https:\/\/easybi.lu\/wp-content\/uploads\/2024\/05\/jupyterlab-open-notebook2-1-300x196.png 300w\" sizes=\"auto, (max-width: 339px) 100vw, 339px\" \/><\/a><\/figure>\n<\/figure>\n\n\n\n<p>You can now run all the steps using the \u00ab\u00a0<strong>double play<\/strong>\u00a0\u00bb button<\/p>\n\n\n\n<figure class=\"wp-block-image size-full\"><img loading=\"lazy\" decoding=\"async\" width=\"667\" height=\"778\" src=\"https:\/\/easybi.lu\/wp-content\/uploads\/2024\/05\/jupyterlab-running-notebook.png\" alt=\"\" class=\"wp-image-1627\" srcset=\"https:\/\/easybi.lu\/wp-content\/uploads\/2024\/05\/jupyterlab-running-notebook.png 667w, https:\/\/easybi.lu\/wp-content\/uploads\/2024\/05\/jupyterlab-running-notebook-257x300.png 257w\" sizes=\"auto, (max-width: 667px) 100vw, 667px\" \/><\/figure>\n\n\n\n<p>JupyterLab will ask you to restart the kernel, click on <strong>Restart<\/strong><\/p>\n\n\n\n<figure class=\"wp-block-image size-full\"><img loading=\"lazy\" decoding=\"async\" width=\"498\" height=\"161\" src=\"https:\/\/easybi.lu\/wp-content\/uploads\/2024\/05\/jupyterlab-restart-kernel.png\" alt=\"\" class=\"wp-image-1628\" srcset=\"https:\/\/easybi.lu\/wp-content\/uploads\/2024\/05\/jupyterlab-restart-kernel.png 498w, https:\/\/easybi.lu\/wp-content\/uploads\/2024\/05\/jupyterlab-restart-kernel-300x97.png 300w\" sizes=\"auto, (max-width: 498px) 100vw, 498px\" \/><\/figure>\n\n\n\n<p>That&rsquo;s it you see all the results for each cell querying the two dataframes, I reproduce SQL behavior using the corresponding lambda function, we can also make window aggregations.<\/p>\n\n\n\n<p>For information, IDE tools like Visual studio are able to show the notebook result graphicaly.<\/p>\n\n\n\n<figure class=\"wp-block-image size-full\"><img loading=\"lazy\" decoding=\"async\" width=\"762\" height=\"730\" src=\"https:\/\/easybi.lu\/wp-content\/uploads\/2024\/05\/visual-studio-open-notebook.png\" alt=\"\" class=\"wp-image-1630\" srcset=\"https:\/\/easybi.lu\/wp-content\/uploads\/2024\/05\/visual-studio-open-notebook.png 762w, https:\/\/easybi.lu\/wp-content\/uploads\/2024\/05\/visual-studio-open-notebook-300x287.png 300w\" sizes=\"auto, (max-width: 762px) 100vw, 762px\" \/><\/figure>\n\n\n\n<h2 class=\"wp-block-heading\"><br>Conclusion<\/h2>\n\n\n\n<p>JupyterLab and pandas rock, the webui tool is reponsive and really fast and by using Pandas you can read and write data in a variety of format I even didn&rsquo;t expect (orc, parquet, <a href=\"https:\/\/docs.python.org\/3\/library\/pickle.html\" data-type=\"link\" data-id=\"https:\/\/docs.python.org\/3\/library\/pickle.html\">pickle<\/a>, csv, hdf, sql, dict, excel, json, html, <a href=\"https:\/\/arrow.apache.org\/docs\/python\/feather.html\" data-type=\"link\" data-id=\"https:\/\/arrow.apache.org\/docs\/python\/feather.html\">feather<\/a>, <a href=\"https:\/\/docs.fileformat.com\/word-processing\/latex\/\" data-type=\"link\" data-id=\"https:\/\/docs.fileformat.com\/word-processing\/latex\/\">latex<\/a>, <a href=\"https:\/\/www.stata.com\/\" data-type=\"link\" data-id=\"https:\/\/www.stata.com\/\">stata<\/a>, <a href=\"https:\/\/cloud.google.com\/bigquery\/docs\/reference\/standard-sql\/format-elements\" data-type=\"link\" data-id=\"https:\/\/cloud.google.com\/bigquery\/docs\/reference\/standard-sql\/format-elements\">gbq<\/a>, records, string, clipboard, markdown). <\/p>\n\n\n\n<p>Here is a list of others cool Jupyterlab features <\/p>\n\n\n\n<ul class=\"wp-block-list\">\n<li>Git out of the box integration, you can clone your repository directly<\/li>\n\n\n\n<li>Manage multiple kernel for notebook isolation<\/li>\n\n\n\n<li>A very user friendly <a href=\"https:\/\/jupyterlab.readthedocs.io\/en\/latest\/user\/debugger.html\" data-type=\"link\" data-id=\"https:\/\/jupyterlab.readthedocs.io\/en\/latest\/user\/debugger.html\">debugger<\/a><\/li>\n\n\n\n<li>You can download your notebook as is or export it as a file like pdf, md, html, &#8230;<\/li>\n<\/ul>\n","protected":false},"excerpt":{"rendered":"<p>Introduction Pandas standing for panel data is managing an outstanding object called DataFrame and the first time I encountered the famous \u00ab\u00a0dataframe object\u00a0\u00bb concept was when I was asked to put in place an Apache Spark SQL environment in my current customer&rsquo;s day. As a SQL and java developper, I&#8230;<\/p>\n","protected":false},"author":3,"featured_media":1642,"comment_status":"closed","ping_status":"closed","sticky":false,"template":"","format":"standard","meta":{"footnotes":""},"categories":[43,42,41],"tags":[38,36],"class_list":["post-1604","post","type-post","status-publish","format-standard","has-post-thumbnail","hentry","category-jupyterlab","category-pandas","category-python","tag-python","tag-tips"],"yoast_head":"<!-- This site is optimized with the Yoast SEO plugin v26.8 - https:\/\/yoast.com\/product\/yoast-seo-wordpress\/ -->\n<title>Dataframes with Pandas on JupyterLab - EasyBI<\/title>\n<meta name=\"description\" content=\"Introduction to pandas, the most famous python data analysis library and see how to launch a jupyter docker compose demo\" \/>\n<meta name=\"robots\" content=\"index, follow, max-snippet:-1, max-image-preview:large, max-video-preview:-1\" \/>\n<link rel=\"canonical\" href=\"https:\/\/easybi.lu\/index.php\/2024\/05\/30\/dataframes-with-pandas-on-jupyterlab\/\" \/>\n<meta property=\"og:locale\" content=\"fr_FR\" \/>\n<meta property=\"og:type\" content=\"article\" \/>\n<meta property=\"og:title\" content=\"Dataframes with Pandas on JupyterLab - 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